Module comseg

• Dataset
  • ComSegDataset
    • ComSegDataset.__init__()
    • ComSegDataset.convert_spots_coord_in_pixel()
    • ComSegDataset.add_prior_from_mask()
    • ComSegDataset.count_matrix_in_situ_from_knn()
    • ComSegDataset.compute_edge_weight()
• Graph model
  • ComSegGraph
    • ComSegGraph.__init__()
    • ComSegGraph.create_graph()
    • ComSegGraph.community_vector()
    • ComSegGraph.add_cluster_id_to_graph()
    • ComSegGraph.classify_centroid()
    • ComSegGraph.associate_rna2landmark()
    • ComSegGraph.get_anndata_from_result()
• ComSegDict
  • ComSegDict
    • ComSegDict.__init__()
    • ComSegDict.concatenate_anndata()
    • ComSegDict.compute_community_vector()
    • ComSegDict.compute_insitu_clustering()
    • ComSegDict.add_cluster_id_to_graph()
    • ComSegDict.classify_centroid()
    • ComSegDict.associate_rna2landmark()
    • ComSegDict.anndata_from_comseg_result()
    • ComSegDict.run_all()
• In-situ clustering
  • InSituClustering
    • InSituClustering.__init__()
    • InSituClustering.compute_normalization_parameters()
    • InSituClustering.cluster_rna_community()
    • InSituClustering.merge_cluster()
    • InSituClustering.classify_small_community()