Index

_

__init__() (comseg.clustering.InSituClustering method) (comseg.dataset.ComSegDataset method) (comseg.dictionary.ComSegDict method) (comseg.model.ComSegGraph method)

A

add_cluster_id_to_graph() (comseg.dictionary.ComSegDict method) (comseg.model.ComSegGraph method) add_prior_from_mask() (comseg.dataset.ComSegDataset method)

anndata_from_comseg_result() (comseg.dictionary.ComSegDict method) associate_rna2landmark() (comseg.dictionary.ComSegDict method) (comseg.model.ComSegGraph method)

C

classify_centroid() (comseg.dictionary.ComSegDict method) (comseg.model.ComSegGraph method) classify_small_community() (comseg.clustering.InSituClustering method) cluster_rna_community() (comseg.clustering.InSituClustering method) community_vector() (comseg.model.ComSegGraph method) compute_community_vector() (comseg.dictionary.ComSegDict method) compute_edge_weight() (comseg.dataset.ComSegDataset method) compute_insitu_clustering() (comseg.dictionary.ComSegDict method)

compute_normalization_parameters() (comseg.clustering.InSituClustering method) ComSegDataset (class in comseg.dataset) ComSegDict (class in comseg.dictionary) ComSegGraph (class in comseg.model) concatenate_anndata() (comseg.dictionary.ComSegDict method) convert_spots_coord_in_pixel() (comseg.dataset.ComSegDataset method) count_matrix_in_situ_from_knn() (comseg.dataset.ComSegDataset method) create_graph() (comseg.model.ComSegGraph method)

G

get_anndata_from_result() (comseg.model.ComSegGraph method)

I

InSituClustering (class in comseg.clustering)

M

merge_cluster() (comseg.clustering.InSituClustering method)

R

run_all() (comseg.dictionary.ComSegDict method)